STRINGSTRING
RSAG_03071 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03071" - GTP cyclohydrolase 1 type 2 homolog in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03071GTP cyclohydrolase 1 type 2 homolog (260 aa)    
Predicted Functional Partners:
RSAG_03072
Uncharacterized protein (235 aa)
 
        0.958
sigA
RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (375 aa)
     
 
  0.879
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (598 aa)
   
        0.828
RSAG_03070
Uncharacterized protein (555 aa)
   
      0.806
RSAG_03075
Deoxyguanosinetriphosphate triphosphohydrolase-like protein (335 aa)
   
        0.734
RSAG_03133
1-acyl-sn-glycerol-3-phosphate acyltransferase (248 aa)
 
        0.574
ffh
Fifty-four homolog ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY (451 aa)
 
          0.556
RSAG_03284
1-acyl-sn-glycerol-3-phosphate acyltransferase (237 aa)
 
        0.553
purE
5-(carboxyamino)imidazole ribonucleotide mutase ; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) (166 aa)
   
      0.502
RSAG_02950
Uncharacterized protein (410 aa)
   
        0.449
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Server load: low (11%) [HD]