STRINGSTRING
RSAG_03072 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03072" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03072Uncharacterized protein (235 aa)    
Predicted Functional Partners:
RSAG_03071
GTP cyclohydrolase 1 type 2 homolog (260 aa)
 
        0.958
sigA
RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (375 aa)
   
        0.868
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (598 aa)
   
        0.837
RSAG_03070
Uncharacterized protein (555 aa)
   
        0.765
addA
ATP-dependent helicase/nuclease AddA ; ATP-dependent DNA helicase (1269 aa)
 
          0.741
RSAG_02943
UPF0297 protein RSAG_02943 (93 aa)
   
          0.731
RSAG_03075
Deoxyguanosinetriphosphate triphosphohydrolase-like protein (335 aa)
              0.730
RSAG_02463
Helicase-exonuclease AddAB, AddB subunit (1124 aa)
 
          0.639
RSAG_01086
Uncharacterized protein (581 aa)
 
          0.611
RSAG_03247
Uncharacterized protein (683 aa)
   
          0.536
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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