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RSAG_03171 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03171" - Transcript cleavage factor GreA in Ruminococcus sp. 5139BFAA
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Predicted Interactions
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gene co-occurrence
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textmining
co-expression
protein homology
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RSAG_03171Transcript cleavage factor GreA ; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (160 aa)    
Predicted Functional Partners:
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1251 aa)
   
 
 
  0.802
RSAG_03070
Uncharacterized protein (555 aa)
   
 
  0.762
murI
Glutamate racemase ; Provides the (R)-glutamate required for cell wall biosynthesis (273 aa)
     
 
  0.712
RSAG_03172
tRNA-dihydrouridine synthase ; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (321 aa)
   
        0.699
rho
ATP-dependent helicase Rho ; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (465 aa)
   
 
 
  0.651
recA
Recombinase A ; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (354 aa)
 
   
  0.625
RSAG_02943
UPF0297 protein RSAG_02943 (93 aa)
 
          0.622
RSAG_03174
Biotin-[acetyl-CoA-carboxylase] ligase (267 aa)
              0.621
nusA
Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination (406 aa)
 
 
 
  0.578
RSAG_02104
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) (1071 aa)
     
 
  0.566
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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