Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein (217 aa)
Predicted Functional Partners:
TrkH family potassium uptake protein (460 aa)
TrkH family potassium uptake protein (445 aa)
Uncharacterized protein (257 aa)
Uncharacterized protein (144 aa)
Uncharacterized protein (313 aa)
TrkH family potassium uptake protein (479 aa)
tRNA-dihydrouridine synthase ; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (321 aa)
Biotin-[acetyl-CoA-carboxylase] ligase (267 aa)
Ornithine carbamoyltransferase ; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline (333 aa)
PTS system, Fru family, IIC component (637 aa)
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412 Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA