STRINGSTRING
RSAG_03275 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03275" - Spore cortex biosynthesis protein YabQ in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03275Spore cortex biosynthesis protein YabQ (154 aa)    
Predicted Functional Partners:
RSAG_03274
Sporulation protein YabP (93 aa)
              0.879
RSAG_03276
Uncharacterized protein (85 aa)
              0.840
RSAG_00930
Uncharacterized protein (103 aa)
   
          0.703
RSAG_03123
Uncharacterized protein (153 aa)
   
          0.623
RSAG_03132
Uncharacterized protein (128 aa)
   
          0.622
RSAG_00172
Sporulation protein YqfD (394 aa)
   
          0.605
RSAG_02395
Uncharacterized protein (109 aa)
   
          0.597
RSAG_02464
Uncharacterized protein (145 aa)
   
          0.581
RSAG_02157
Uncharacterized protein (313 aa)
   
          0.574
RSAG_00741
Stage V sporulation protein B (454 aa)
   
          0.574
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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