STRINGSTRING
RSAG_03290 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03290" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03290Uncharacterized protein (299 aa)    
Predicted Functional Partners:
RSAG_03291
DNA polymerase III, delta’ subunit (329 aa)
              0.914
RSAG_03289
Uncharacterized protein (246 aa)
              0.879
RSAG_03293
Uncharacterized protein (468 aa)
              0.802
rsmI
rRNA (cytidine-2’-O-)-methyltransferase RsmI ; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (283 aa)
              0.770
rny
Ribonuclease Y ; Endoribonuclease that initiates mRNA decay (519 aa)
 
          0.757
RSAG_03292
Uncharacterized protein (195 aa)
              0.742
ftsY
Signal recognition particle receptor FtsY ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (316 aa)
     
      0.551
RSAG_01642
TatD family hydrolase (263 aa)
 
          0.530
RSAG_02710
TIGR00375 family protein (413 aa)
   
          0.515
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (689 aa)
              0.442
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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