STRINGSTRING
RSAG_03388 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03388" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03388Uncharacterized protein (311 aa)    
Predicted Functional Partners:
dnaA
Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (451 aa)
     
 
  0.766
RSAG_02548
Uncharacterized protein (302 aa)
 
     
  0.748
RSAG_02474
Uncharacterized protein (294 aa)
 
     
  0.746
RSAG_01059
Uncharacterized protein (302 aa)
 
     
  0.731
RSAG_02312
Uncharacterized protein (289 aa)
 
     
  0.695
RSAG_03389
Aspartate ammonia-lyase (480 aa)
 
          0.693
RSAG_01355
Uncharacterized protein (1517 aa)
         
  0.631
RSAG_00909
Uncharacterized protein (241 aa)
 
     
  0.570
recG
ATP-dependent DNA helicase RecG ; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3’- to 5’- polarity. Unwinds branched duplex DNA (Y-DNA) (684 aa)
   
   
  0.527
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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