STRINGSTRING
RSAG_03392 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03392" - Spermidine synthase in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03392Spermidine synthase (286 aa)    
Predicted Functional Partners:
RSAG_03391
Uncharacterized protein (503 aa)
 
   
  0.992
RSAG_03394
Carboxynorspermidine decarboxylase (373 aa)
   
  0.983
RSAG_03393
Uncharacterized protein (426 aa)
   
 
    0.953
RSAG_03396
N-carbamoylputrescine amidase (292 aa)
 
 
  0.938
RSAG_03293
Uncharacterized protein (468 aa)
 
   
  0.875
RSAG_01984
Uncharacterized protein (269 aa)
   
 
  0.851
RSAG_01234
Diaminopimelate decarboxylase (426 aa)
   
  0.833
RSAG_03460
Uncharacterized protein (399 aa)
   
  0.828
aguA
Agmatine iminohydrolase (367 aa)
         
  0.801
RSAG_02191
Guanine deaminase (427 aa)
     
    0.792
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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