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RSAG_03394 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03394" - Carboxynorspermidine decarboxylase in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03394Carboxynorspermidine decarboxylase (373 aa)    
Predicted Functional Partners:
RSAG_03393
Uncharacterized protein (426 aa)
 
 
  0.992
RSAG_03392
Spermidine synthase (286 aa)
   
  0.983
RSAG_03391
Uncharacterized protein (503 aa)
 
   
  0.977
RSAG_02238
Aspartokinase (402 aa)
   
  0.861
RSAG_01747
Aspartokinase (439 aa)
   
  0.861
aguA
Agmatine iminohydrolase (367 aa)
   
 
  0.849
RSAG_03396
N-carbamoylputrescine amidase (292 aa)
   
 
    0.813
RSAG_01872
Branched-chain amino acid aminotransferase (341 aa)
   
  0.805
RSAG_02360
Diaminopimelate epimerase (151 aa)
   
 
  0.802
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (284 aa)
   
 
  0.802
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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