STRINGSTRING
RSAG_03400 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03400" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03400Uncharacterized protein (363 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase ; Catalyzes the conversion of L-arabinose to L-ribulose (499 aa)
 
     
  0.905
RSAG_03402
Uncharacterized protein (534 aa)
 
  0.875
RSAG_01949
Uncharacterized protein (337 aa)
   
 
  0.788
RSAG_01943
Uncharacterized protein (370 aa)
   
 
  0.788
RSAG_01544
Uncharacterized protein (358 aa)
   
 
  0.788
RSAG_00350
Uncharacterized protein (324 aa)
   
 
  0.788
RSAG_00406
PTS system, Fru family, IIC component (637 aa)
         
  0.781
RSAG_03186
L-ribulose-5-phosphate 4-epimerase (230 aa)
 
     
  0.716
RSAG_01964
Uncharacterized protein (326 aa)
   
 
  0.706
RSAG_01963
Uncharacterized protein (320 aa)
   
 
  0.706
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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