STRINGSTRING
RSAG_03423 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_03423" - UPF0246 protein RSAG_03423 in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_03423UPF0246 protein RSAG_03423 (253 aa)    
Predicted Functional Partners:
RSAG_04560
Uncharacterized protein (129 aa)
 
          0.927
RSAG_03425
Uncharacterized protein (69 aa)
              0.664
RSAG_03422
Diguanylate cyclase (GGDEF) domain-containing protein (349 aa)
              0.512
RSAG_00892
Uncharacterized protein (151 aa)
 
          0.496
RSAG_02599
ATP-dependent DNA helicase RecQ (629 aa)
              0.438
RSAG_00715
DNA topoisomerase (734 aa)
              0.438
proS
Prolyl-tRNA synthetase ; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) (479 aa)
              0.434
RSAG_03421
No annotation available (46 aa)
              0.403
RSAG_03427
Uncharacterized protein (70 aa)
              0.400
RSAG_03426
Uncharacterized protein (142 aa)
              0.400
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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