STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22736.1Sel1 repeat superfamily protein. (134 aa)    
Predicted Functional Partners:
EFL24562.1
Putative membrane protein.
    
 0.693
EFL24232.1
Acetoin utilization protein AcuC.
    
   0.568
hisS
histidine-tRNA ligase.
    
  0.549
EFL23898.1
Putative tetratricopeptide repeat protein.
   
 0.549
EFL22737.1
Conserved hypothetical protein.
       0.538
EFL27164.1
tyrosine-tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.530
EFL24807.1
Putative two-component system sensor kinase/response regulator, bifunctional protein.
    
 0.520
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.517
EFL24467.1
DnaK protein; Truncated CDS.
   
 
 0.517
dnaK-2
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.517
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.