STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6F778Beta-carotene isomerase D27 chloroplastic. (275 aa)    
Predicted Functional Partners:
CCD7
Carotenoid cleavage dioxygenase7.
     
 0.988
PS1
Lycopene beta cyclase chloroplastic.
     
 0.960
BCH1
Beta-carotene hydroxylase; Belongs to the sterol desaturase family.
     
 0.933
A0A1D6HPL7
Cytochrome P450 13; Belongs to the cytochrome P450 family.
     
 0.918
A0A1D6JM56
Hydroxylase8; Belongs to the sterol desaturase family.
     
 0.911
B6SXU9_MAIZE
Beta-carotene hydroxylase; Belongs to the sterol desaturase family.
     
 0.911
HYD3
Beta-carotene hydroxylase 1; Belongs to the sterol desaturase family.
     
 0.908
CCD8
Carotenoid cleavage dioxygenase8.
      
 0.886
CRTISO1
Carotenoid isomerase 1.
      
 0.590
ZCIS_MAIZE
15-cis-zeta-carotene isomerase, chloroplastic; Isomerase involved in the biosynthesis of carotenoids. Catalyzes the cis- to trans-conversion of the 15-cis-bond in 9,15,9'- tri-cis-zeta-carotene.
      
 0.566
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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