STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Uaz7c01c01RNA-binding protein CP31B chloroplastic. (305 aa)    
Predicted Functional Partners:
B4FDC9_MAIZE
Chlorophyll A-B binding family protein.
   
  
 0.891
HrBP1
Harpin binding protein 1.
      
 0.778
ORRM1
Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.
  
  
 0.693
A0A1D6IK73
Serine/arginine-rich splicing factor SC35.
  
 
 0.691
SC26
Splicing factor, arginine/serine-rich 2.
  
 
 0.687
H4C7
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.664
A0A1D6QK58
Serine/arginine-rich splicing factor SC35.
  
 
 0.661
A0A1D6JBP2
RNA-binding (RRM/RBD/RNP motifs) family protein.
  
   
 0.621
A0A1D6NRY6
Polyadenylate-binding protein 3.
  
 
  0.541
A0A1D6K2V6
Nuclear cap-binding protein subunit 1.
    
 0.539
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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