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STRINGSTRING
tha8 protein (Zea mays) - STRING interaction network
"tha8" - Tha8 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tha8Tha8; Thylakoid assembly8 (263 aa)    
Predicted Functional Partners:
tdsgR05E01
annotation not available (74 aa)
           
  0.842
CAF2
CRS2-associated factor 2, chloroplastic; Required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles (611 aa)
     
   
  0.810
ppr10
Chloroplast pentatricopeptide repeat protein 10; Pentatricopeptide repeat10; Uncharacterized protein (786 aa)
           
  0.736
ppr5
Pentatricopeptide repeat-containing protein PPR5, chloroplastic; Involved in the biogenesis of the plastid translation machinery by promoting the splicing of group II introns in chloroplasts. Stabilizes the chloroplast trnG pre-RNA by directly binding to a group II intron, where it protects an endonuclease- sensitive site and stimulates splicing. Binds specific sites within group II intron trnG pre-RNA. Binds with high affinity to the 5’-UTR of the chloroplastic petA mRNA (499 aa)
           
  0.731
100126359
CRM-domain containing factor CFM2 chloroplastic; CFM2 alternative polyadenylation form 1 (1039 aa)
     
   
  0.728
RNC1
Ribonuclease III domain-containing protein RNC1, chloroplastic; Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on both subgroup IIA and subgroup IIB introns. The substrates of the subgroup II also require the CRM domain proteins CAF1 or CAF2. Binds both single-stranded and double-stranded RNA non-specifically, but lacks endonuclease activity. Required for plastid ribosome biogenesis (525 aa)
     
   
  0.662
otp51
annotation not available (783 aa)
     
   
  0.660
WTF1
Protein WHAT’S THIS FACTOR 1; RNA-binding protein involved in the chloroplastic group II intron splicing. Binds specific group II introns and promotes their splicing. Functions in the context of a heterodimer with the ribonuclease III domain-containing protein RNC1 (577 aa)
     
   
  0.658
CFM3
CRM-domain containing factor CFM3, chloroplastic/mitochondrial; Binds specific group II introns in chloroplasts and facilitates their splicing. Acts on subgroup IIB introns. The substrates of the subgroup IIB also require the CRM domain proteins CAF1 or CAF2, with a simultaneous binding of CFM3 and CAF1 or CAF2. May influence the biogenesis of the mitochondrial small ribosomal subunit (By similarity) (1523 aa)
     
   
  0.593
GRMZM2G158839_P01
Pentatricopeptide repeat-containing protein chloroplastic (496 aa)
           
  0.593
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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