STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B6U313_MAIZEProtein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (81 aa)    
Predicted Functional Partners:
B6SPB6_MAIZE
Protein transport protein SEC61 gamma subunit.
   
 0.994
B6SPI4_MAIZE
Protein transport protein Sec61 subunit gamma-3.
   
 0.994
B6STC0_MAIZE
Protein transport protein Sec61 subunit gamma-3.
   
 0.994
A0A1D6L5Q6
SecY protein transport family protein; Belongs to the SecY/SEC61-alpha family.
   
 0.984
B6TB44_MAIZE
Protein transport protein SEC61 gamma subunit.
   
 0.963
SECY
Preprotein translocase subunit SECY, chloroplastic; The central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity).
    
 0.947
A0A1D6KDZ6
Translocon-associated protein beta (TRAPB) family protein.
   
 0.925
A0A1D6MWX6
Translocon-associated protein beta (TRAPB) family protein.
   
 0.925
A0A1D6LHK0
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
  
  
 
0.903
B6SNM4_MAIZE
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
  
  
 
0.903
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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