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STRINGSTRING
phot1 protein (Zea mays) - STRING interaction network
"phot1" - Nonphototropic hypocotyl 1 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phot1Nonphototropic hypocotyl 1 (761 aa)    
Predicted Functional Partners:
tdsgR33B08
Transposon protein Mutator sub-class ; Belongs to the NPH3 family (746 aa)
     
 
  0.929
103654777
NAD(P)-binding Rossmann-fold superfamily protein (598 aa)
     
        0.848
100285301
Rieske domain containing protein (370 aa)
     
        0.843
100194126
Cryptochrome2 (688 aa)
     
   
  0.830
GRMZM2G093708_P01
Uncharacterized protein (322 aa)
     
 
  0.801
103626223
annotation not available (406 aa)
     
 
  0.801
PHYA1
Phytochrome A; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose- bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reducta [...] (1131 aa)
     
   
  0.794
GRMZM2G172152_P01
Cryptochrome-2 (654 aa)
     
   
  0.789
phyA1
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1131 aa)
     
   
  0.777
100273233
Regulator of chromosome condensation2 (443 aa)
           
  0.714
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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