STRINGSTRING
LIM1 protein (Zea mays) - STRING interaction network
"LIM1" - LIM transcription factor homolog in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIM1LIM transcription factor homolog (lim1), mRNA (195 aa)    
Predicted Functional Partners:
gpm417
Hypothetical protein LOC100216623 (278 aa)
     
        0.659
GRMZM2G072121_P01
Hypothetical protein LOC100191303 (260 aa)
     
        0.615
TUBB6
Tubulin beta-6 chain (Beta-6-tubulin); Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (496 aa)
     
        0.493
TUBB5
Tubulin beta-5 chain (Beta-5-tubulin); Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (445 aa)
     
        0.469
Zm.148395
Secretory carrier-associated membrane protein 3-like (282 aa)
     
        0.468
GRMZM2G097739_P01
Cysteine-type endopeptidase/ ubiquitin thiolesterase (495 aa)
     
        0.467
GRMZM2G123440_P01
Hypothetical protein LOC100276048 (351 aa)
     
        0.463
Zm.7330
Kinesin-1 (754 aa)
     
        0.436
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (8%) [HD]