STRINGSTRING
lhcb9 protein (Zea mays) - STRING interaction network
"lhcb9" - Chlorophyll a-b binding protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhcb9Chlorophyll a-b binding protein (260 aa)    
Predicted Functional Partners:
Zm.30543
Hypothetical protein LOC100382705 (426 aa)
       
 
  0.793
GRMZM2G071349_P01
Uncharacterized LOC100193951 (146 aa)
           
  0.721
RPS17
30S ribosomal protein S17, chloroplastic Precursor ; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (132 aa)
           
  0.721
GRMZM5G877110_P01
Uncharacterized protein (70 aa)
       
      0.692
psbB
Photosystem II CP47 chlorophyll apoprotein (PSII 47 kDa protein)(Protein CP-47); One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (508 aa)
       
      0.692
GRMZM2G096020_P01
Hypothetical protein LOC100274307 (551 aa)
           
  0.623
GRMZM2G175562_P02
Hypothetical protein LOC100272890 (329 aa)
     
   
  0.609
GRMZM2G113349_P01
Hypothetical protein LOC100191684 (373 aa)
     
   
  0.609
GRMZM2G092311_P02
Chlorophyll a-b binding protein 6A (273 aa)
     
   
0.595
GRMZM2G036880_P01
Chlorophyll a-b binding protein 6A (249 aa)
     
   
0.592
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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