STRINGSTRING
vde1 protein (Zea mays) - STRING interaction network
"vde1" - Violaxanthin de-epoxidase in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vde1Violaxanthin de-epoxidase (446 aa)    
Predicted Functional Partners:
Zm.67287
Zeaxanthin epoxidase ; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (669 aa)
         
  0.957
BCH1
Beta-carotene hydroxylase (309 aa)
         
  0.940
HYD3
Beta-carotene hydroxylase (319 aa)
         
  0.916
GRMZM5G826824_P01
Beta-carotene 3-hydroxylase, chloroplastic-like (157 aa)
         
    0.900
Zm.100807
Hypothetical protein LOC100273156 (200 aa)
         
    0.900
Zm.92692
Photosystem II 22 kDa protein (272 aa)
     
   
  0.862
GRMZM2G071349_P01
Uncharacterized LOC100193951 (146 aa)
     
      0.654
psb29
Photosystem II subunit29 (291 aa)
     
   
  0.640
Zm.5516
Protein clueless (1764 aa)
     
        0.602
Lhcb5-1
Chlorophyll a/b-binding apoprotein CP26 precursor (283 aa)
           
  0.595
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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