STRINGSTRING
Orphan160 protein (Zea mays) - STRING interaction network
"Orphan160" - LOC100101540 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Orphan160LOC100101540 (cl53605_1), mRNA (250 aa)    
Predicted Functional Partners:
cl15090_1
LOC100282187 (194 aa)
           
  0.545
gpm907b
Hypothetical protein LOC100217148 (538 aa)
           
  0.545
GRMZM2G164160_P01
Hypothetical protein LOC100382597 (704 aa)
           
  0.457
Zm.100344
Serine/threonine-protein kinase ATG1-like (743 aa)
           
  0.457
GRMZM2G380078_P01
Annotation not available (325 aa)
           
  0.418
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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