STRINGSTRING
Zm.123019 protein (Zea mays) - STRING interaction network
"Zm.123019" - LGC1 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.123019LGC1 (LOC100281001), mRNA (145 aa)    
Predicted Functional Partners:
Zm.125103
Lachrymatory-factor synthase (177 aa)
           
  0.720
GRMZM2G078723_P01
Lachrymatory factor synthase (187 aa)
           
  0.720
GRMZM2G360677_P01
40S ribosomal protein S8 (221 aa)
           
  0.529
RPS8
40S ribosomal protein S8 (221 aa)
           
  0.529
Zm.31788
DNA polymerase I A, chloroplastic-like (715 aa)
           
  0.527
Zm.17519
FIP1 (216 aa)
           
  0.525
FIP1
Putative uncharacterized protein (262 aa)
           
  0.525
GRMZM2G073377_P02
Anther-specific protein MZm3-3 Precursor (127 aa)
           
  0.522
HMG2
HMG-like nucleosome/chromatin assembly factor D (139 aa)
           
  0.432
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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