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STRINGSTRING
emp2 protein (Zea mays) - STRING interaction network
"emp2" - Pentatricopeptide repeat-containing protein mitochondrial in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emp2Pentatricopeptide repeat-containing protein mitochondrial (455 aa)    
Predicted Functional Partners:
ubl1
U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (188 aa)
           
  0.732
brk1
Protein BRICK1; Promotes multiple, actin-dependent cell polarization events in the developing leaf epidermis. Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex; Belongs to the BRK1 family (84 aa)
     
      0.596
541996
SBP-domain protein 5 (403 aa)
           
  0.562
103646871
annotation not available (590 aa)
           
  0.560
103630864
ATP binding protein (419 aa)
           
  0.560
umc1987a
AN15 (163 aa)
           
  0.560
103636232
Brassinosteroid insensitive1a; Putative leucine-rich repeat receptor-like protein kinase family protein (1122 aa)
           
  0.560
pza00667
Mitochondrial import inner membrane translocase subunit TIM16 (113 aa)
       
      0.552
GATA6
Putative GATA transcription factor family protein (438 aa)
           
  0.550
GRMZM2G320920_P01
Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (325 aa)
           
  0.541
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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