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100193767 protein (Zea mays) - STRING interaction network
"100193767" - U11/U12 small nuclear ribonucleoprotein 65 kDa protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
100193767U11/U12 small nuclear ribonucleoprotein 65 kDa protein (450 aa)    
Predicted Functional Partners:
GRMZM2G494600_P01
annotation not available (487 aa)
     
 
  0.977
IDP2400
Inactive protein FRIGIDA (284 aa)
     
 
  0.952
GRMZM5G884325_P01
Small nuclear ribonucleoprotein Sm D3 (132 aa)
     
 
  0.936
100284316
Small nuclear ribonucleoprotein Sm D3; Uncharacterized protein (132 aa)
     
 
  0.936
pco138115
Small nuclear ribonucleoprotein Sm D3; Uncharacterized protein (132 aa)
     
 
  0.936
103649582
Small nuclear ribonucleoprotein E; Uncharacterized protein (177 aa)
     
 
  0.934
GRMZM2G014091_P01
Small nuclear ribonucleoprotein E (88 aa)
     
 
  0.934
GRMZM2G413193_P01
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (421 aa)
     
 
  0.928
C3H42
C2H2 and C2HC zinc fingers superfamily protein (166 aa)
     
 
  0.928
AY110400
LSM Sm-like protein family member; Uncharacterized protein (99 aa)
     
 
  0.927
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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