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Zm.3965 protein (Zea mays) - STRING interaction network
"Zm.3965" - ATP-dependent RNA helicase DDX41 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.3965ATP-dependent RNA helicase DDX41 (618 aa)    
Predicted Functional Partners:
GRMZM2G356176_P01
Annotation not available (210 aa)
     
      0.853
Zm.12713
Presequence protease 1, chloroplastic/mitochondrial (490 aa)
     
      0.853
GRMZM2G072861_P01
Uncharacterized protein (291 aa)
     
      0.853
kelp3
Hypothetical protein LOC100384655 (209 aa)
     
      0.726
CoAp15.3
RNA polymerase II transcriptional coactivator KELP (140 aa)
       
      0.698
cl190_1
LOC100286301 (106 aa)
       
      0.698
Zm.67016
Putative uncharacterized protein (1236 aa)
     
   
  0.697
GRMZM2G301536_P01
Hypothetical protein LOC100383273 (483 aa)
     
 
  0.695
LOC542179
U1 snRNP (491 aa)
     
 
  0.695
GRMZM2G067649_P01
Annotation not available (251 aa)
       
      0.648
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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