• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
GRMZM2G046088_P03 protein (Zea mays) - STRING interaction network
"GRMZM2G046088_P03" - RNA pseudouridine synthase 1 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GRMZM2G046088_P03RNA pseudouridine synthase 1 (348 aa)    
Predicted Functional Partners:
GRMZM6G923769_P01
Sequence-specific DNA binding transcription factor; Shwachman-Bodian-Diamond syndrome protein; Uncharacterized protein (212 aa)
       
      0.611
100279238
tRNA pseudouridine synthase (486 aa)
   
   
  0.587
umc1160
Ribosomal large subunit pseudouridine synthase B (350 aa)
   
 
  0.549
GRMZM2G153227_P01
H/ACA ribonucleoprotein complex subunit 3-like protein; Uncharacterized protein (64 aa)
           
  0.548
pco124263
Transmembrane protein 18 (179 aa)
 
 
        0.541
100217116
tRNA pseudouridine synthase (335 aa)
   
   
  0.540
100280567
tRNA pseudouridine synthase (443 aa)
   
   
  0.540
pco076082
H/ACA ribonucleoprotein complex subunit 2; Uncharacterized protein (149 aa)
     
   
  0.539
GRMZM2G315902_P01
annotation not available (1132 aa)
   
   
  0.517
100282214
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (267 aa)
           
  0.510
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (7%) [HD]