STRINGSTRING
CCD protein (Zea mays) - STRING interaction network
"CCD" - White cap1 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDWhite cap1 (550 aa)    
Predicted Functional Partners:
PS1
Hypothetical protein LOC100383002 (490 aa)
     
   
  0.687
GRMZM2G144273_P01
Putative uncharacterized protein (604 aa)
   
   
  0.638
HYD3
Beta-carotene hydroxylase (319 aa)
           
  0.628
ZDS1
Zeta-carotene desaturase, chloroplastic/chromoplastic Precursor (EC 1.14.99.30)(Carotene 7,8-desaturase); Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (572 aa)
     
   
  0.624
Zm.18811
Deoxy xylulose synthase 1 (719 aa)
     
   
  0.598
TIDP2662
Hypothetical protein LOC100274367 (225 aa)
   
     
  0.571
YPTM2
GTP-binding protein YPTM2 ; Protein transport. Probably involved in vesicular traffic (By similarity) (203 aa)
           
  0.565
Zm.88065
Putative geranylgeranyl pyrophosphate synthase 1 (367 aa)
           
  0.565
GRMZM2G179564_P01
Annotation not available (89 aa)
           
  0.557
PSY2
Phytoene synthase2 (402 aa)
     
   
  0.548
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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