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pco116928b protein (Zea mays) - STRING interaction network
"pco116928b" - LOC100282000 in Zea mays
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco116928bLOC100282000 (130 aa)    
Predicted Functional Partners:
RPS17
30S ribosomal protein S17, chloroplastic Precursor ; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (132 aa)
     
   
  0.883
GRMZM2G157007_P01
50S ribosomal protein L40 (148 aa)
     
   
  0.856
GRMZM2G108643_P01
Hypothetical protein LOC100274150 (209 aa)
     
        0.818
NBP
Nucleic acid binding protein1 (303 aa)
     
        0.801
bsd2
Bundle sheath defective2 (129 aa)
     
        0.796
Zm.8875
LOC100283244 (170 aa)
     
        0.787
Zm.385
Uroporphyrinogen decarboxylase, chloroplastic Precursor (URO-D)(UPD)(EC 4.1.1.37) (394 aa)
     
        0.787
GRMZM2G118005_P01
Hypothetical protein LOC100382451 (222 aa)
     
   
  0.785
GRMZM2G077214_P01
Hypothetical protein LOC100274225 (404 aa)
     
        0.784
SECY
Preprotein translocase subunit secY, chloroplastic Precursor (CpSecY); The central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug (By similarity) (553 aa)
     
        0.773
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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