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Zm.23980 protein (Zea mays) - STRING interaction network
"Zm.23980" - Pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.23980Pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like (956 aa)    
Predicted Functional Partners:
cl36914_1
LOC100281604 (362 aa)
           
  0.624
Zm.44689
Lethal embryo mutant1 (224 aa)
     
   
  0.621
Zm.431
Sigma-like factor6 (542 aa)
     
 
  0.616
GRMZM2G003182_P01
Sigma-like factor2B (528 aa)
     
 
  0.597
sig2B
Sigma-like factor2B (528 aa)
     
 
  0.561
Zm.25003
Hypothetical protein LOC100277394 (577 aa)
     
   
  0.551
Zm.12554
Sigma factor protein (568 aa)
       
 
  0.551
S70-L2
Putative uncharacterized protein (496 aa)
       
 
  0.544
Zm.163639
OCL4 protein (884 aa)
           
  0.529
Zm.21536
SURF1 (344 aa)
     
   
  0.497
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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