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cl5847_1 protein (Zea mays) - STRING interaction network
"cl5847_1" - E3 ubiquitin-protein ligase in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cl5847_1E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (302 aa)    
Predicted Functional Partners:
GRMZM2G172900_P01
Serine/threonine-protein kinase Nek4 (533 aa)
           
  0.899
rs55625579
Putative RING zinc finger domain superfamily protein (318 aa)
       
 
  0.716
100272915
Putative RING zinc finger domain superfamily protein; Uncharacterized protein (268 aa)
       
 
  0.716
100285102
Translocon Tic40; Uncharacterized protein (450 aa)
           
  0.683
GRMZM2G053019_P01
Translocon Tic40 (433 aa)
           
  0.683
100282170
Ubiquitin-conjugating enzyme E2 variant 1A; Belongs to the ubiquitin-conjugating enzyme family (166 aa)
       
      0.590
103654688
Ubiquitin-conjugating enzyme E2 variant 1C; Ubiquitin-conjugating enzyme spm2; Uncharacterized protein ; Belongs to the ubiquitin-conjugating enzyme family (148 aa)
       
      0.590
csu378
Ubiquitin-conjugating enzyme E2 variant 1C; Belongs to the ubiquitin-conjugating enzyme family (161 aa)
       
      0.590
GRMZM2G027378_P01
Ubiquitin-conjugating enzyme spm2; Uncharacterized protein (148 aa)
       
      0.590
100192908
Ubiquitin conjugating enzyme5; Belongs to the ubiquitin-conjugating enzyme family (161 aa)
       
      0.590
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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