• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
GRMZM2G063942_P01 protein (Zea mays) - STRING interaction network
"GRMZM2G063942_P01" - DNA-binding protein BIN4 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GRMZM2G063942_P01DNA-binding protein BIN4 (364 aa)    
Predicted Functional Partners:
IDP1632
DNA topoisomerase 6 subunit A; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity (436 aa)
     
   
  0.935
pco131338
DNA-binding protein RHL1 (537 aa)
       
 
  0.917
GRMZM2G015011_P01
annotation not available (232 aa)
     
   
  0.850
100279342
E3 ubiquitin-protein ligase COP1 (655 aa)
       
 
  0.771
GRMZM2G104920_P03
Ubiquitin ligase protein COP1 (693 aa)
       
 
  0.771
103647912
annotation not available (1758 aa)
     
   
  0.720
103633530
annotation not available (1525 aa)
     
   
  0.720
103644140
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (369 aa)
           
  0.702
GRMZM2G464976_P02
Uncharacterized protein (1140 aa)
       
 
  0.688
100216556
Uncharacterized protein (1138 aa)
       
 
  0.688
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (11%) [HD]