STRINGSTRING
HMG6 protein (Zea mays) - STRING interaction network
"HMG6" - HMG-like nucleosome/chromatin assembly factor D in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMG6HMG-like nucleosome/chromatin assembly factor D (126 aa)    
Predicted Functional Partners:
SPT16
FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16)(Global transcription factor group C protein 102); Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the di [...] (1055 aa)
     
  0.967
Zm.30721
Uncharacterized protein At2g41620-like (926 aa)
     
      0.908
SSRP1
FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1)(Recombination signal sequence recognition protein 1)(Zm-SSRP1); Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by pr [...] (651 aa)
     
  0.905
hmg12
FACT complex subunit SSRP1-B (644 aa)
     
  0.899
GRMZM2G376957_P01
Histone H3.2 (136 aa)
     
  0.873
GRMZM2G073275_P01
Histone H4 (103 aa)
     
  0.869
GRMZM2G098236_P02
Annotation not available (1036 aa)
       
  0.861
GRMZM2G473891_P01
Uncharacterized protein (612 aa)
     
  0.846
gpm370
Hypothetical protein LOC100274407 (1052 aa)
       
 
  0.841
GRMZM2G367026_P01
Hypothetical protein LOC100382013 (822 aa)
       
      0.840
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (14%) [HD]