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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
LOB16 protein (Zea mays) - STRING interaction network
"LOB16" - Seed specific protein Bn15D17A in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOB16Seed specific protein Bn15D17A (313 aa)    
Predicted Functional Partners:
100381753
Protein NLP6 (873 aa)
           
  0.563
103654889
Auxin-responsive protein SAUR71 (126 aa)
           
  0.562
100280994
Photosystem II core complex protein psbY; Photosystem II core complex proteins psbY (191 aa)
           
  0.562
LOB21
LOB transcription factor; RTCN (167 aa)
           
  0.560
myb27
MYB transcription factor; Uncharacterized protein (362 aa)
           
  0.560
LOB39
Putative LOB domain-containing family protein (195 aa)
           
  0.548
tdsgR20H03
CSC1-like protein (796 aa)
           
  0.538
EREB134
Ethylene-responsive transcription factor 2 (229 aa)
           
  0.528
pco068404
Seed maturation protein (129 aa)
           
  0.511
GRMZM2G046092_P01
Uncharacterized protein (97 aa)
           
  0.487
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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