STRINGSTRING
Zm.5616 protein (Zea mays) - STRING interaction network
"Zm.5616" - Threonine endopeptidase in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.5616Threonine endopeptidase (181 aa)    
Predicted Functional Partners:
Zm.12299
ATP-dependent protease Clp ATPase subunit (322 aa)
   
     
  0.542
pco144630
Hypothetical protein LOC100277981 (205 aa)
   
   
  0.527
GRMZM2G150946_P01
Annotation not available (88 aa)
   
          0.525
AC197783.3_FGP005
Uncharacterized protein (190 aa)
   
          0.524
GRMZM2G173735_P01
Annotation not available (67 aa)
   
          0.523
Zm.31261
Uncharacterized LOC103640739 (321 aa)
   
          0.523
GRMZM2G149534_P01
Hypothetical protein LOC100275988 (LOC100275988), mRNA (171 aa)
   
          0.510
GRMZM2G305406_P03
Hypothetical protein LOC100382709 (379 aa)
   
          0.509
pet2
Hypothetical protein LOC100194324 (287 aa)
   
          0.509
pco133450
Hypothetical protein LOC100272453 (278 aa)
   
          0.507
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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