STRINGSTRING
Zm.5800 protein (Zea mays) - STRING interaction network
"Zm.5800" - Fiber protein Fb11 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.5800Fiber protein Fb11 (64 aa)    
Predicted Functional Partners:
pco124606
Hypothetical protein LOC100277004 (123 aa)
     
   
  0.580
Zm.37022
Hypothetical protein LOC100382305 (LOC100382305), mRNA (125 aa)
     
   
  0.580
GRMZM2G045155_P01
B12D protein (LOC100280945), mRNA (125 aa)
           
  0.563
pco088700
Uncharacterized LOC100276587 (94 aa)
     
   
  0.552
Zm.26496
ATP binding protein (503 aa)
           
  0.546
GRMZM2G091845_P01
Hypothetical protein LOC100194307 (514 aa)
           
  0.546
GRMZM2G074393_P01
Hypothetical protein LOC100273400 (LOC100273400), mRNA (193 aa)
           
  0.546
GRMZM2G007080_P01
Mitochondrial import inner membrane translocase subunit tim22 (170 aa)
     
   
  0.467
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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