STRINGSTRING
pco067337 protein (Zea mays) - STRING interaction network
"pco067337" - LOC100282506 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco067337LOC100282506 (138 aa)    
Predicted Functional Partners:
CNR5
Hypothetical protein LOC100193499 (184 aa)
           
  0.721
gras32
Hypothetical protein LOC100272800 (507 aa)
           
  0.721
pco148653
LOC100285558 (534 aa)
           
  0.720
btf3
Hypothetical protein LOC100192047 (169 aa)
           
  0.622
tif-4A3
Eukaryotic initiation factor 4A (eIF-4A)(EC 3.6.4.13)(ATP-dependent RNA helicase eIF4A); ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5’-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon (By similarity) (414 aa)
           
  0.529
pco142427
LOC100284272 (329 aa)
           
  0.465
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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