STRINGSTRING
rtcs protein (Zea mays) - STRING interaction network
"rtcs" - Rootless concerning crown and seminal lateral roots in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcsRootless concerning crown and seminal lateral roots (244 aa)    
Predicted Functional Partners:
rth3
Roothair defective3 (667 aa)
           
  0.721
rth1
Roothairless 1 (889 aa)
           
  0.721
ARF34
Auxin response factor 25-like; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (897 aa)
           
  0.721
AUX34
Hypothetical protein LOC100193994 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (486 aa)
           
  0.719
iaa28
Hypothetical protein LOC100191581 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (244 aa)
           
  0.648
ARF7
Auxin response factor 1; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (686 aa)
           
  0.566
Bk2L3
Brittle stalk-2-like protein 3 (448 aa)
           
  0.565
Zm.118897
WD repeat-containing protein 74-like (461 aa)
           
  0.563
GRMZM2G153722_P01
Putative 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding family (1796 aa)
           
  0.563
aprl2
Adenosine 5’-phosphosulfate reductase 2 (456 aa)
           
  0.563
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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