STRINGSTRING
100280759 protein (Zea mays) - STRING interaction network
"100280759" - Sm protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
100280759Sm protein; Sm protein isoform 1; Sm protein isoform 2 (120 aa)    
Predicted Functional Partners:
GRMZM2G521844_P01
Endoplasmic reticulum oxidoreductin-1 (479 aa)
           
  0.738
tbp1
TATA-box-binding protein 1; General transcription factor that functions at the core of the DNA-binding multiprotein factor TFIID. Binding of TFIID to the TATA box is the initial transcriptional step of the pre- initiation complex (PIC), playing a role in the activation of eukaryotic genes transcribed by RNA polymerase II (287 aa)
           
  0.731
100284260
RuvB-like 2; Uncharacterized protein ; Belongs to the RuvB family (478 aa)
           
  0.731
drh1
DEAD box RNA helicase ; Belongs to the DEAD box helicase family (571 aa)
           
  0.582
phyS11
Phytase1; Phytase (387 aa)
           
  0.582
eif6
Eukaryotic translation initiation factor 4E-1; Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5’-terminal secondary structure and recruitment of mRNA to the ribosome. Recognizes and binds the 7-methylguanosine- containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures (218 aa)
           
  0.512
100281001
Beta-13-N-Acetylglucosaminyltransferase family protein; LGC1; Uncharacterized protein (145 aa)
           
  0.485
GRMZM5G823484_P01
annotation not available (230 aa)
           
  0.418
103632029
annotation not available (359 aa)
           
  0.403
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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