STRINGSTRING
pco124475 protein (Zea mays) - STRING interaction network
"pco124475" - GAST1 protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco124475GAST1 protein (114 aa)    
Predicted Functional Partners:
GRMZM2G176301_P01
C-4 methylsterol oxidase (265 aa)
           
  0.623
gpm532
LOC100282314 (301 aa)
           
  0.623
gpm829
LOC100285879 (293 aa)
           
  0.623
GRMZM2G060183_P01
Hypothetical protein LOC100279532 (478 aa)
           
  0.621
pco102923
LOC100282067 (291 aa)
           
  0.621
Zm.32023
Retinol dehydrogenase 12 (LOC100285880), mRNA (361 aa)
           
  0.566
GRMZM2G121034_P01
Retinol dehydrogenase 12 (367 aa)
           
  0.566
GRMZM2G142664_P01
Auxin-independent growth promoter (575 aa)
           
  0.565
Zm.34260
Auxin-independent growth promoter (577 aa)
           
  0.565
Zm.86002
Lectin-like receptor kinase 7 (690 aa)
           
  0.565
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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