STRINGSTRING
sum1 protein (Zea mays) - STRING interaction network
"sum1" - Siroheme uroporphyrinogen methyltransferase1 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sum1Siroheme uroporphyrinogen methyltransferase1 (423 aa)    
Predicted Functional Partners:
GRMZM2G116258_P01
Hypothetical protein LOC100193482 (474 aa)
 
 
 
  0.906
NIR
Ferredoxin--nitrite reductase, chloroplastic Precursor; Fragment (EC 1.7.7.1) (597 aa)
 
   
  0.875
Zm.13263
Hypothetical protein LOC100384717 (LOC100384717), mRNA (593 aa)
 
   
  0.874
GRMZM2G107402_P01
glutamyl-tRNA reductase, chloroplastic-like (537 aa)
 
 
 
  0.873
gtr1
Hypothetical protein LOC100191548 (531 aa)
 
 
 
  0.872
AC213521.3_FGP005
Hypothetical protein LOC100193466 (535 aa)
 
 
 
  0.871
cf1
Hypothetical protein LOC100191140 (394 aa)
 
   
  0.868
pco070684
LOC100284619 (356 aa)
 
   
  0.867
SIR
LOC542221 ; Essential protein with sulfite reductase activity required in assimilatory sulfate reduction pathway during both primary and secondary metabolism and thus involved in development and growth (635 aa)
 
   
  0.864
GRMZM2G009519_P01
Hypothetical protein LOC100193969 (212 aa)
   
 
  0.861
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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