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Zm.122397 protein (Zea mays) - STRING interaction network
"Zm.122397" - valine--tRNA ligase-like in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.122397valine--tRNA ligase-like (815 aa)    
Predicted Functional Partners:
Zm.2572
Uncharacterized protein (802 aa)
     
 
  0.949
Zm.151704
Probable methionine--tRNA ligase (802 aa)
     
 
  0.949
Zm.20172
Probable methionine--tRNA ligase (801 aa)
     
 
  0.949
GRMZM5G815894_P03
60S ribosomal protein L5-1 (302 aa)
     
 
  0.933
GRMZM2G479581_P01
50S ribosomal protein L18, chloroplastic-like (129 aa)
     
 
  0.933
GRMZM2G163081_P01
60S ribosomal protein L5-1 (302 aa)
     
 
  0.933
GRMZM2G142097_P02
50S ribosomal protein L18 (165 aa)
     
 
  0.933
GRMZM2G090738_P01
60S ribosomal protein L5-1-like (301 aa)
     
 
  0.933
GRMZM2G078756_P01
Hypothetical protein LOC100280209 (447 aa)
   
   
  0.921
GRMZM2G301553_P01
Uncharacterized protein (487 aa)
     
 
  0.913
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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