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STRINGSTRING
GRMZM2G117346_P01 protein (Zea mays) - STRING interaction network
"GRMZM2G117346_P01" - Splicing factor 3B subunit 1 in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GRMZM2G117346_P01Splicing factor 3B subunit 1 (1280 aa)    
Predicted Functional Partners:
GRMZM2G404377_P01
MIF4G domain-containing protein / MA3 domain-containing protein (177 aa)
     
 
  0.996
AC203535.4_FGP001
CDC5 protein (925 aa)
     
 
  0.995
100217051
Splicing factor SF3a60-like protein (504 aa)
     
 
  0.995
GRMZM2G057394_P02
ATP-dependent RNA helicase DDX23; Uncharacterized protein ; Belongs to the DEAD box helicase family (758 aa)
     
 
  0.993
103640981
Protein STABILIZED1 (956 aa)
     
 
  0.992
GRMZM2G049902_P01
annotation not available (962 aa)
     
 
  0.992
GRMZM2G125151_P01
Uncharacterized protein (686 aa)
     
 
  0.991
GRMZM2G429110_P01
LL-diaminopimelate aminotransferase chloroplastic (275 aa)
     
 
  0.991
100286002
Pre-mRNA-splicing factor prp45 (609 aa)
     
 
  0.990
GRMZM2G030659_P01
Putative DEAD-box ATP-dependent RNA helicase family protein (1065 aa)
     
 
  0.988
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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