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STRINGSTRING
pco128743 protein (Zea mays) - STRING interaction network
"pco128743" - Subtilisin-like protease SBT1.8 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco128743Subtilisin-like protease SBT1.8 (773 aa)    
Predicted Functional Partners:
c3h7
Zinc finger CCCH domain-containing protein 29 (372 aa)
     
   
  0.903
gpm18
Zinc finger CCCH domain-containing protein 64 (607 aa)
           
  0.785
GRMZM5G852097_P01
annotation not available (478 aa)
           
  0.782
abi15
annotation not available (377 aa)
           
  0.782
GRMZM2G317614_P01
Nucleotide binding protein (612 aa)
           
  0.782
103630727
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (736 aa)
           
  0.782
GRMZM2G389233_P03
Peptidase M1 family protein (887 aa)
   
   
  0.718
103632335
annotation not available (614 aa)
           
  0.704
100191915
Uncharacterized protein (609 aa)
           
  0.704
100275621
Hydroxyproline-rich glycoprotein family protein (430 aa)
           
  0.699
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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