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STRINGSTRING
pco072231b protein (Zea mays) - STRING interaction network
"pco072231b" - Splicing factor 3B subunit 5 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco072231bSplicing factor 3B subunit 5; Uncharacterized protein (87 aa)    
Predicted Functional Partners:
100286340
PHD finger-like domain-containing protein 5A; Uncharacterized protein (157 aa)
     
 
  0.996
AY110400
LSM Sm-like protein family member; Uncharacterized protein (99 aa)
     
      0.991
103649582
Small nuclear ribonucleoprotein E; Uncharacterized protein (177 aa)
     
      0.980
GRMZM2G014091_P01
Small nuclear ribonucleoprotein E (88 aa)
     
      0.980
100282336
Small nuclear ribonucleoprotein G; Uncharacterized protein (80 aa)
     
      0.979
100193784
Small nuclear ribonucleoprotein G; Uncharacterized protein (80 aa)
     
      0.979
100285982
LSM7-like (98 aa)
     
      0.978
GRMZM2G016097_P01
LSM7-like; LSM7-like protein (156 aa)
     
      0.978
100286213
Sm-like protein LSM5; SAD1; SAD1 isoform 1; SAD1 isoform 2; Uncharacterized protein (137 aa)
     
      0.978
100283319
SAD1; SAD1 isoform 1; SAD1 isoform 2; Uncharacterized protein (88 aa)
     
      0.978
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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