Groups of genes that are frequently observed in each other's genomic neighborhood.
Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Pentatricopeptide repeat-containing protein (320 aa)
Predicted Functional Partners:
Pentatricopeptide repeat-containing protein mitochondrial (379 aa)
Mitochondrial glycoprotein (185 aa)
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (686 aa)
50S ribosomal protein L3-2 ; Belongs to the universal ribosomal protein uL3 family (318 aa)
PEBP (Phosphatidylethanolamine-binding protein) family protein (174 aa)
O-acyltransferase (494 aa)
O-acyltransferase (512 aa)
Gibberellin 2-beta-dioxygenase ; Belongs to the iron/ascorbate-dependent oxidoreductase family (334 aa)
Gibberellin 2-oxidase8; Belongs to the iron/ascorbate-dependent oxidoreductase family (432 aa)
Gibberellin 2-beta-dioxygenase, mRNA ; Belongs to the iron/ascorbate-dependent oxidoreductase family (477 aa)
Your Current Organism:
NCBI taxonomy Id: 4577 Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize