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tdsgR21G05 protein (Zea mays) - STRING interaction network
"tdsgR21G05" - RNA-binding (RRM/RBD/RNP motifs) family protein in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdsgR21G05RNA-binding (RRM/RBD/RNP motifs) family protein (635 aa)    
Predicted Functional Partners:
umc2567
Splicing factor U2af small subunit A (287 aa)
     
  0.968
c3h44
annotation not available (172 aa)
     
  0.968
C3H36
Splicing factor U2af subunit isoform 1; Splicing factor U2af subunit isoform 2; Splicing factor U2af subunit isoform 3; Splicing factor U2af subunit isoform 4; Splicing factor U2af subunit isoform 5 (304 aa)
     
  0.968
100284238
Splicing factor U2af 38 kDa subunit; Uncharacterized protein (299 aa)
     
  0.968
100191858
Splicing factor U2af subunit isoform 1; Splicing factor U2af subunit isoform 2; Splicing factor U2af subunit isoform 3; Uncharacterized protein (307 aa)
     
  0.968
GRMZM2G310465_P01
annotation not available (514 aa)
     
 
  0.963
AC203535.4_FGP001
CDC5 protein (925 aa)
     
 
  0.929
100383273
U11/U12 small nuclear ribonucleoprotein 35 kDa protein (483 aa)
     
 
  0.921
LOC542179
U1 snRNP (491 aa)
     
 
  0.919
IDP147
Small nuclear ribonucleoprotein family protein (105 aa)
     
 
  0.908
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize
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