STRINGSTRING
Zm.95908 protein (Zea mays) - STRING interaction network
"Zm.95908" - Pectate lyase in Zea mays
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zm.95908Pectate lyase (451 aa)    
Predicted Functional Partners:
GRMZM2G177940_P01
Hypothetical protein LOC100381490 (399 aa)
       
  0.916
GRMZM2G175499_P01
Pectinesterase PPE8B (559 aa)
       
  0.916
GRMZM2G136106_P01
Hypothetical protein LOC100280285 (563 aa)
       
  0.916
Zm.1975
Pectinesterase-1 ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (566 aa)
       
  0.916
GRMZM2G019411_P01
Pectinesterase-1 (324 aa)
       
  0.916
GRMZM2G017555_P01
Hypothetical protein LOC100191701 (595 aa)
       
  0.916
GRMZM2G128406_P01
Annotation not available (173 aa)
         
    0.900
GRMZM2G075222_P01
Pollen allergen Phl p 11 (178 aa)
     
   
  0.513
Zm.25490
Pollen allergen Phl p 11 (165 aa)
           
  0.489
pco138410b
Hypothetical protein LOC100192702 (164 aa)
           
  0.489
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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