STRINGSTRING
pco116062 protein (Zea mays) - STRING interaction network
"pco116062" - Hydroxymethylbutenyl 4-diphosphate synthase in Zea mays
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pco116062Hydroxymethylbutenyl 4-diphosphate synthase (746 aa)    
Predicted Functional Partners:
HDR
Hypothetical protein LOC100383164 (462 aa)
 
  0.997
Zm.155622
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (226 aa)
 
 
  0.986
GRMZM2G110252_P01
Annotation not available (81 aa)
 
 
  0.969
dxr
Dxr protein (472 aa)
 
   
  0.953
Zm.146028
Uncharacterized protein (500 aa)
 
   
  0.935
GRMZM2G379271_P01
Uncharacterized protein (228 aa)
 
   
  0.933
AC209374.4_FGP002
Hypothetical protein LOC100276918 (225 aa)
 
 
  0.866
GRMZM5G856881_P01
Hypothetical protein LOC100272499 (298 aa)
   
 
  0.814
Zm.119361
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like (295 aa)
   
 
  0.813
umc2169
LOC100282760 (410 aa)
   
   
  0.784
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
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