Groups of genes that are frequently observed in each other's genomic neighborhood.
Co-purification, co-crystallization, Yeast2Hybrid, Genetic Interactions, etc ... as imported from primary sources.
Genes that are sometimes fused into single open reading frames.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Endoglucanase 6; Belongs to the glycosyl hydrolase 9 (cellulase E) family (623 aa)
Predicted Functional Partners:
annotation not available (1159 aa)
Uncharacterized protein (330 aa)
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1053 aa)
DNA ligase (909 aa)
DNA-binding protein BIN4 (364 aa)
Glycine-rich cell wall structural protein (114 aa)
60S ribosomal protein L10 (220 aa)
60S ribosomal protein L10-3 (245 aa)
annotation not available (591 aa)
Steroid nuclear receptor ligand-binding (334 aa)
Your Current Organism:
NCBI taxonomy Id: 4577 Other names: Z. mays, Zea mays, Zea mays L., Zea mays var. japonica, maize