STRINGSTRING
rdr6 protein (Zea mays) - STRING interaction network
"rdr6" - RNA-dependent RNA polymerase 6 in Zea mays
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rdr6RNA-dependent RNA polymerase 6 (937 aa)    
Predicted Functional Partners:
SGS3
Protein SUPPRESSOR OF GENE SILENCING 3 homolog (ZmSGS3)(Protein LEAFBLADELESS 1); Required for the biogenesis of miRNAs and trans-acting siRNAs and essential for the specification of adaxial/abaxial organ polarity. May be involved in natural virus resistance (By similarity) (594 aa)
       
 
  0.954
RGD2
Ragged seedling 2 (1032 aa)
           
  0.864
GRMZM2G413853_P01
Endoribonuclease Dicer homolog 3b-like (1517 aa)
     
 
  0.846
IDP1473
Hypothetical protein LOC100194211 (271 aa)
           
  0.720
cl12053_1
Hypothetical protein LOC100280421 (360 aa)
           
  0.720
umc1541
Hypothetical protein LOC100381664 (522 aa)
           
  0.717
nfa101
Nucleosome/chromatin assembly factor group A (380 aa)
           
  0.716
nfa104
Nucleosome/chromatin assembly factor A104 (258 aa)
           
  0.716
hda113
LOC542568 (476 aa)
           
  0.716
Zm.10391
Small RNA 2’-O-methyltransferase (931 aa)
           
  0.680
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Euchlaena, Z. mays, Zea, Zea L., Zea mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (11%) [HD]